30th April 2022 – (Hong Kong) It has been more than two years since the COVID-19 epidemic hit Hong Kong. Professor Leo Poon, Head of the Division of Public Health Laboratory Science of the University of Hong Kong said that the biggest worry about the current epidemic is not knowing when the virus will stop mutating. As for the new Omicron mutant virus strain BA.4 that appeared in South Africa, Poon pointed out that the patient’s condition is usually mild, but there is not enough data to understand the speed of its spread, and it is impossible to predict the trend of the epidemic, and the number of confirmed cases may continue to rise and fall.
Poon said in a webinar at the Hong Kong Youth Academy of Sciences that it is still unclear whether the symptoms will become severe or mild after being infected with the new variant of the virus. “Symptoms are getting more and more mild. In the long run, historically, decades and hundreds of years, it is going in this direction, but we cannot predict whether the next mutant virus strain will be more virulent in the short term. Everyone has to prepare for the next few years, the number of confirmed cases may be high or low, and we don’t know which direction it will go and when.”
Poon also shared the molecular epidemiological research on the new coronavirus. The research team he led continued to find out the transmission mode and the possibility of mutation of the virus through large-scale genome sequencing tests. Large numbers of hamsters responded to the virus and the team successfully traced the route of transmission. Poon continued to point out that his team has yet to find the coronavirus in the rodents in the market, and even if cats and dogs are infected, they will not produce high concentrations of the virus. He also pointed out that the virus genome sequencing can also help monitor the global epidemic. In the first three months of last year, about 200 people arrived in Hong Kong with 58 COVID-19 strains, some of which have never been announced by other countries and regions, reflecting that many countries complete testing measures have not been taken. As for the Omicron BA.4 and BA.5 virus strains appearing in South Africa, he believes that there is not enough data to explain the extent of the spread of the virus strains. It is believed that the impact of vaccine efficacy is not significant.
South Africa is seeing a rapid rise in COVID-19 cases driven by yet another version of the coronavirus, health experts say.
New omicron sublineages, discovered by South African scientists earlier this month, account for about 70% of new coronavirus cases in South Africa and the strains appear to be more infectious than predecessors.
The BA.4 and BA.5 sublineages appear to be more infectious than the earlier BA.2 lineage, which itself was more infectious than the original omicron variant, Tulio de Oliveira, who runs gene sequencing institutes in the country, said on Twitter.
Meanwhile, the two new Omicron variants sweeping South Africa—likely able to evade vaccines and natural immunity from previous infections—have been identified in the U.S., multiple COVID-19 researchers told Fortune.
“BA.4 sequences have been identified in samples from multiple U.S. states,” Andy Pekosz, virologist at the Johns Hopkins Bloomberg School of Public Health, told Fortune, adding that the variant is clearly circulating in the U.S., “it’s just not clear precisely how widely.”
Madison Stoddard, a COVID-19 researcher at drug development firm Fractal Therapeutics, confirmed Friday that there were 12 cases of U.S.-sequenced BA.4 in GISAID, an international research database that tracks changes in COVID and the flu virus, with the earliest collected on 30th March. There were also five cases of BA.5 sequenced in the U.S. as of Friday, with the earliest collection date of 29th March, she said.
The U.S. Centers for Disease Control did not immediately respond to a request for comment Friday. But the agency’s COVID Data Tracker states that cases of BA.4 and BA.5, in addition to BA.1, original strain of Omicron, and BA.3—as well as their sublineages, except for BA.1.1 and its sublineages—are all listed under the same variant, B.1.1.529. In sum, they total less than 1% of U.S. cases from 17th to 23rd April but are labeled as variants of concern.
BA.4 and BA.5 appear to be more infectious than BA.2, also known as “stealth Omicron,” which was more infectious than the original Omicron, BA.1, Bloomberg reported Thursday, citing South African COVID expert Tulio de Oliveira, the head of the institutes at the universities of KwaZulu-Natal and Stellenbosch.
The two new variants have “mutations in the lineages that allow the virus to evade immunity,” he told Bloomberg. “We expect that it can cause reinfections and it can break through some vaccines, because that’s the only way something can grow in South Africa, where we estimate that more than 90% of the population has a level of immune protection.”
Cases are surging in South Africa despite the fact that almost all South Africans have been vaccinated or had COVID, he said, signaling that these strains are more likely to be capable of evading the body’s defences.
South African public health officials on Friday said that the country may be entering a fifth COVID wave, due to BA.4 and BA.5, as the number of positive tests rises. Hospitalisations are also rising, they said. Deaths have not yet, Bloomberg reported, though they’re considered a “lagging indicator” by public health officials.
Significant mutations in BA.4 make it a new lineage distinct from stealth Omicron, Dr. Renee Wegrzyn, head of biotech firm Concentric’s innovation team, told Fortune.
Concentric has partnered with the CDC to track Omicron in travelers arriving from South Africa—including those that arrive via Europe—at John F. Kennedy International Airport and Newark-Liberty International Airport in New York, San Francisco International Airport in California, and Hartsfield-Jackson Atlanta International Airport in Georgia. Wegrzyn’s team identified the 11th reported case of BA.4 in the U.S.—in a passenger from South Africa arriving in Atlanta about a week ago, she told Fortune on Thursday.
A phenomenon called “S gene target failure” —a reference to some PCR tests’ initial inability to detect the variant due to a small deletion on the S gene, one of three genes the tests look for—was signature of the original Omicron, but not of BA.2 and BA.3.
But in BA.4, it’s back, Wegrzyn said.
“Early indicators [were that] something was different, this looks different on that initial test. It looks positive, but not like other positives,” she said.
“Something is fundamentally different about this.”
South African scenario may not play out in U.S.
While it’s well established that BA.4 has “some kind of growth advantage, at least in South Africa,” the same scenario may not play out in the U.S., Stoddard said, pointing to Omicron variant Beta as an example.
“The Beta variant was very successful in the South African population and we didn’t see it spread very widely in the [United] States,” she said. “The contact patterns are different, the nature of immunity is different in different populations. There’s no guarantee we’ll have the same outcomes South Africa has seen with these particular variants.”
Pekosz said BA.4 and BA.5 are closely related and should act somewhat similarly to each other, and that immunity from previous Omicron strains should hold.
“Both have some mutations … that are of particular concern because they are linked to increased transmission, but immunity from BA.1 or BA.2 infection should still recognise these variants, so I would not expect a surge that rivalled what we saw with BA.1,” he said.
But de Oliveira disagrees, tweeting on Friday that “previous infections with Omicron BA.1 will not be sufficient to prevent a second infection with BA.4 and BA.5.
“We are all tired of this virus, but he may not be tired of us,” he tweeted. “We need now to take seriously the decreasing immunity from previous infections and … show that vaccination is much more reliable to maintain immunity than only infection.”
Part of article appeared in Fortune.